Artificial Intelligence

AI Learns the Natural History of Human Disease

Nature

Clinical decision-making relies on understanding patients’ past health to improve their future health, an impossible task without first understanding how diseases progress over time.

That’s where a new study in Nature suggests AI is ready to help.

It starts with generative pretrained transformers. Researchers built a GPT, dubbed Delphi-2M, to predict the “progression and competing nature of human diseases.” 

  • Delphi-2M was trained on 400k UK Biobank participants (which lean healthier than the average person), and then externally validated on 1.9M Danish patients.
  • The training was designed to predict a patient’s next diagnosis and the time to it, using only data readily available within the EHR: past medical history, age, sex, BMI, and alcohol/smoking status.

How’d it do? The results speak for themselves:

  • Delphi-2M was able to forecast the incidence of over 1,000 diseases with comparable accuracy to existing models that are fine-tuned to predict single diseases.
  • Death could be predicted with eerily impressive accuracy (AUC: 0.97), and the survival curves that it simulated lined up almost perfectly with national mortality statistics.
  • Comorbidities emerged naturally from the training, and Delphi-2M was able to understand the progression from type 2 diabetes to eye disease to nerve damage.
  • Delphi-2M’s ability to predict heart attack and stroke matched established scores like QRisk, and it even outperformed leading biomarker-based AI models.

Better forecasts inform better policies. If policymakers can consult the Oracle of Delphi to see how many people will develop a disease over the next decade, the authors conclude that they’ll also be able to implement better regulations to prepare. 

  • Not a bad theory, assuming models trained on historical data can make forecasts that hold up to evolving treatments and populations (and that politicians act in the best interest of the people:).

The Takeaway

AI is reaching the point where it can predict thousands of diseases as well as the best narrowly focused models, and that could have big implications for everything from early screening to policymaking.

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